Conferences

Program

The Asilomar Conference program begins Friday evening, October 13 and concludes Monday evening, October 16, 2023. Most attendees depart at their leisure on Tuesday, October 17.

The conference sessions (talks, posters, coffee breaks, evening receptions) will all be located in the CHAPEL building. View Asilomar Conference Center campus map on page 2 of preliminary program (link below).

A final program booklet will be distributed onsite at the meeting. The booklet will include a directory of attendees.

A preliminary detailed program is available HERE (updated 10-11-2023)

Friday, October 13, 2023

3:00 - 6:00 pm, ASMS Asilomar Conference Badge pick-up, Chapel

3:30 - 5:30 pm, Optional  HANDS-ON TUTORIAL (open to all attendees), Chapel

6:00 - 7:00 pm, Dinner for Asilomar lodgers and those that adv. purchase tickets, Crocker Dining Hall

7:00 - 8:15 pm, OPENING SESSION, Chapel

  • Martin Frejno (MSAID), A Christmass Carol - Past, Present and Future Challenges for Computational Proteomics

8:15 - 9:30 pm, RECEPTION & POSTERS, Chapel

Friday's Evening Reception is generously sponsored by Bioinformatics Solutions Inc.
 BSIlogo

Saturday, October14, 2023

7:30 - 9:00 am, Breakfast for Asilomar lodgers, Crocker Dining Hall

9:00 - 11:30 am, OPEN PROBLEMS IN THE INTERPRETATION OF MS DATA,Chapel

  • Devin K. Schweppe (University of Washington): Development of biologically aware instrument methods
  • Will Fondrie (Talus Bioscience): The final frontier: These are the voyages through a latent space shared by mass spectra and peptides
  • Ralf Gabriels (VIB-UGent Center for Medical Biotechnology): The future is predicted: Enabling challenging proteomics workflows with machine learning
  • Aivett Bilbao (Pacific Northwest National Laboratory): Challenges in processing omics multidimensional MS measurements and opportunities to address them using AI
  • Paul Rudnick (Spectragen Informatics): Interpretation of DIA Data for Human Identification in Forensics

11:30 am - 12:00 pm, SHORT TALKS SELECTED FROM SUBMITTED ABSTRACTS, Chapel

12:00 pm - 1:00 pm, Lunch for Asilomar lodgers and those that paid offsite fee, Crocker Dining Hall

1:15 - 3:15 pm, DATA SHARING AND REUSE, Chapel

  • Nuno Bandeira (UC San Diego)
  • Eric Deutsch (Institute for Systems Biology): Large-scale reuse of proteomics mass spectrometry data with PeptideAtlas
  • Ananth Prakash (EMBL-EBI): An overview of public proteomics data reuse and dissemination activites
  • Jesse Meyer (Cedars-Sinai): Accessible, reproducible, and sharable quantitative single cell proteomic data analysis with the Platform for Single Cell Science (PSCS)

4:00 - 5:30 pm, SINGLE CELL, Chapel

  • Aleksandra Petelski (Parallel Squared Technology Institute): Single Cell Asymmetry in Early Embryonic Development
  • Sam Payne (Brigham Young University): Open opportunities in single cell proteomics algorithms
  • Devon Kohler (Northeastern University): Computational causal inference methods and single cell proteomics enable the estimation of interventions from purely observational experiments

6:00 - 7:00 pm, Dinner for Asilomar lodgers and those that adv. purchase tickets, Crocker Dining Hall

7:15 - 8:05 pm, POSTER HIGHLIGHT TALKS, Chapel

8:05 - 9:30 pm, RECEPTION & POSTERS, Chapel

Saturday's Evening Reception is generously sponsored by Bruker.
Bruker_logo

Sunday, October 15, 2023

7:30 - 9:00 am, Breakfast for Asilomar lodgers, Crocker Dining Hall

9:00 - 11:30 Am, ADVANCES AND CHALLENGES IN MS-BASED QUANTITATION, Chapel

  • Hannes Röst (University of Toronto): Targeted approaches to DIA data analysis: Extracting information from multiplexed MS spectra
  • Lukas Kall (SciLifeLab): Triqler, a hierarchical Bayesian model for protein summarization
  • Lindsay Pino (Talus Bioscience): Mass spectrometry-based approaches for chemoproteomics and activity-based protein profiling
  • Frank Stein (EMBL): Computational methods for the analysis of thermal proteome profiling data
  • Olga Vitek (Northeastern University): Thermal proteome profiling with MSstats

11:30 am - 12:00 pm, SHORT TALKS SELECTED FROM SUBMITTED ABSTRACTS, Chapel

12:00 - 1:00 pm, Lunch for Asilomar Lodgers and those that paid the offsite fee, Crocker Dining Hall

1:00 - 6:00 pm, FREE AFTERNOON

6:00 - 7:00 pm, Dinner for Asilomar lodgers and those that adv. purchase tickets, Crocker Dining Hall

7:15 - 8:00 pm, PANEL DISCUSSION: PROMISES & PERILS OF MS MACHINE LEARNING, Chapel

8:00 - 9:30 pm, RECEPTION & POSTERS, Chapel

Monday, October 16, 2023

7:30 - 9:00 am, Breakfast for Asilomar lodgers, Crocker Dining Hall

9:00 - 10:40 am, SPATIAL MASS SPECTROMETRY, Chapel

  • Gordon Luu (Bruker): Bridging timsTOF Data with Open-Source Software Using TIMSCONVERT
  • Kylie Bemis (Northeastern University): What’s new in Cardinal for MS imaging pre-processing and machine learning
  • Raf Van de Plas (Delft University of Technology): Spatially Driven Biomarker Candidate Discovery by Interpretable Machine Learning of Imaging Mass Spectrometry and Multimodal Imaging Measurements
  • Chris Anderton (Pacific Northwest National Laboratory): Building molecular atlases of human organs from multimodal imaging methods

11:00 - 11:50 am, BIOLOGICAL AND CLINICAL APPLICATIONS - PART I, Chapel

  • Meena Choi (Genentech): Biomarker discovery experiments: from a model organism to clinical study
  • Klemens Fröhlich (Universität Basel): Evaluation of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity

12:00 - 1:00 pm, Lunch for Asilomar lodgers and those that paid offsite fee, Crocker Dining Hall

1:15 - 3:15 pm, BIOLOGICAL AND CLINICAL APPLICATIONS - PART II, Chapel

  • Bing Zhang (Baylor College of Medicine): Translating cancer proteogenomics data into biological and clinical insights
  • David Fenyö (NYU Langone)
  • Kelly Ruggles (NYU Langone): Using multiomic integration to understand cardiovascular disease, cancer and autoimmunity

2:30 - 2:55 pm, SHORT TALK(S) SELECTED FROM SUBMITTED ABSTRACTS, Chapel

3:15 - 4:10 pm, PLENARY, Chapel

  • Pieter Dorrestein (UC San Diego): Repository scale discovery of previously undescribed microbial disease-associated metabolites and pathways in human biology

6:00 - 7:00 pm, Dinner for Asilomar lodgers and those that adv. purchase tickets, Crocker Dining Hall

7:15 - 8:00 pm, PANEL DISCUSSION: THE FUTURE OF COMPUTATIONAL MASS SPECTROMETRY, Chapel 

8:15 - 9:45 pm, RECEPTION: Bonfire & S'Mores (Marshmallow) Roast, outdoors weather permitting

Tuesday, October 17, 2023

7:30 - 9:00 am, Breakfast for Asilomar lodgers, Crocker

  • Box lunches available for pick up at this time for Asilomar lodgers.

Departures at leisure

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